{ "_id": "6a1f2f00b401979e73426c17", "Package": "icpack", "Type": "Package", "Date": "2024-06-21", "Title": "Survival Analysis of Interval-Censored Data", "Version": "0.1.0", "Authors@R": "c(person(\"Hein\", \"Putter\", role = c(\"aut\", \"cre\"), email = \"h.putter@lumc.nl\"), person(\"Paul\", \"Eilers\", role = \"aut\"))", "Description": "Survival analysis of interval-censored data with\nproportional hazards, and an explicit smooth estimate of the\nbaseline log-hazard with P-splines.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.1", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-15 09:18:46 UTC", "User": "root" }, "Author": "Hein Putter [aut, cre], Paul Eilers [aut]", "Maintainer": "Hein Putter ", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://hputter.r-universe.dev", "Date/Publication": "2024-07-03 02:42:30 UTC", "RemoteUrl": "https://github.com/cran/icpack", "RemoteRef": "HEAD", "RemoteSha": "e8e6f8258c502ca5412df7d77f484ef196ede8d3", "MD5sum": "320dacedcfae91191ca75340a918e6ac", "_user": "hputter", "_type": "src", "_file": "icpack_0.1.0.tar.gz", "_fileid": "6ac20c52b4af4e8e2ae2191ac77d0763f2088107a963c9cf3522a0af7d60034a", "_filesize": 1857706, "_sha256": "6ac20c52b4af4e8e2ae2191ac77d0763f2088107a963c9cf3522a0af7d60034a", "_created": "2026-05-15T09:18:46.000Z", "_published": "2026-06-02T19:29:04.430Z", "_distro": "noble", "_jobs": [ { "job": 79154667041, "time": 172, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7013940008" }, { "job": 79154667945, "time": 162, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7013937311" }, { "job": 79154667173, "time": 181, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7013934397" }, { "job": 79154666866, "time": 219, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7013942766" }, { "job": 79154666342, "time": 222, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7013889843" }, { "job": 79154665974, "time": 114, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7367769644" }, { "job": 79154667076, "time": 112, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7013922820" }, { "job": 79154667249, "time": 139, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7013930458" }, { "job": 79154666993, "time": 114, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7013923599" } ], "_buildurl": "https://github.com/r-universe/hputter/actions/runs/25910046532", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/icpack", "_commit": { "id": "e8e6f8258c502ca5412df7d77f484ef196ede8d3", "author": "Hein Putter ", "committer": "cran-robot ", "message": "version 0.1.0\n", "time": 1719974550 }, "_maintainer": { "name": "Hein Putter", "email": "h.putter@lumc.nl", "login": "hputter", "uuid": 8783843 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "survival", "version": ">= 3.1", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "gridExtra", "role": "Imports" }, { "package": "checkmate", "role": "Imports" }, { "package": "matrixStats", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "reshape2", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "flexsurv", "role": "Suggests" }, { "package": "lemon", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "markdown", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "hputter", "count": 1, "uuid": 8783843 } ], "_userbio": { "uuid": 8783843, "type": "user", "name": "Hein Putter" }, "_downloads": { "count": 171, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/icpack" }, "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/icpack.html", "manual.pdf" ], "_realowner": "hputter", "_cranurl": false, "_releases": [ { "version": "0.1.0", "date": "2024-07-02" } ], "_exports": [ "bbase", "fillplot", "get_input_icfit", "icfit", "init", "rasterplot" ], "_datasets": [ { "name": "drugusers", "title": "Interval-censored drug users data", "object": "drugusers", "class": [ "data.frame" ], "fields": [ "left", "right", "period", "gender", "age" ], "rows": 940, "table": true, "tojson": true }, { "name": "Ova", "title": "Ovarian cancer data", "object": "Ova", "class": [ "data.frame" ], "fields": [ "Diameter", "FIGO", "Karnofsky", "time", "d" ], "rows": 358, "table": true, "tojson": true } ], "_help": [ { "page": "bbase", "title": "Compute a B-spline basis", "topics": [ "bbase" ] }, { "page": "drugusers", "title": "Interval-censored drug users data", "topics": [ "drugusers" ] }, { "page": "Estep", "title": "Perform the E-step in the EM algorithm", "topics": [ "Estep" ] }, { "page": "fillplot", "title": "Fills space between two lines in a graph", "topics": [ "fillplot" ] }, { "page": "fitit", "title": "Fit proportional hazard model with smooth baseline hazard and (optional) interval censoring", "topics": [ "fitit" ] }, { "page": "get_input_icfit", "title": "Get and check input of icfit", "topics": [ "get_input_icfit" ] }, { "page": "icfit", "title": "Fit a proportional hazards model with baseline hazard modeled by P-splines", "topics": [ "icfit" ] }, { "page": "InfoMatrix", "title": "Compute the information matrix", "topics": [ "InfoMatrix" ] }, { "page": "init", "title": "Generate a discrete IC object", "topics": [ "init" ] }, { "page": "Mstep", "title": "Function for fitting proportioal hazard model with baseline hazard", "topics": [ "Mstep" ] }, { "page": "Ova", "title": "Ovarian cancer data", "topics": [ "Ova" ] }, { "page": "plot.icfit", "title": "Plot method for an object of class `icfit`", "topics": [ "plot.icfit" ] }, { "page": "plot.predict.icfit", "title": "Plot method for an object of class `predict.icfit`", "topics": [ "plot.predict.icfit" ] }, { "page": "predict.icfit", "title": "Predict method for an object of class `icfit`", "topics": [ "predict.icfit" ] }, { "page": "print.icfit", "title": "Print method for an object of class `icfit`", "topics": [ "print.icfit" ] }, { "page": "rasterplot", "title": "Plot probabilities as a raster`", "topics": [ "rasterplot" ] }, { "page": "summary.icfit", "title": "Summary method for an object of class `icfit`", "topics": [ "summary.icfit" ] }, { "page": "summary.predict.icfit", "title": "Summary method for an object of class `predict.icfit`", "topics": [ "summary.predict.icfit" ] } ], "_rundeps": [ "backports", "checkmate", "cli", "cpp11", "dplyr", "farver", "generics", "ggplot2", "glue", "gridExtra", "gtable", "isoband", "labeling", "lattice", "lifecycle", "magrittr", "Matrix", "matrixStats", "pillar", "pkgconfig", "plyr", "R6", "RColorBrewer", "Rcpp", "reshape2", "rlang", "S7", "scales", "stringi", "stringr", "survival", "tibble", "tidyselect", "utf8", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "Special.Rmd", "filename": "Special.html", "title": "Parametric models with {icpack}", "author": "Hein Putter & Paul Eilers", "engine": "knitr::knitr", "headings": [ "Introduction", "Constant hazards", "\"Gompertz\" models", "Weibull models", "References" ], "created": "2024-07-03 02:42:30", "modified": "2024-07-03 02:42:30", "commits": 1 }, { "source": "Introduction.Rmd", "filename": "Introduction.html", "title": "Smooth modeling of interval-censored survival data with {icpack}", "author": "Hein Putter & Paul Eilers", "engine": "knitr::knitr", "headings": [ "Introduction", "Drug user data", "Preliminaries", "Using icfit", "Plotting", "Predicting", "References" ], "created": "2024-07-03 02:42:30", "modified": "2024-07-03 02:42:30", "commits": 1 }, { "source": "Ova.Rmd", "filename": "Ova.html", "title": "Smooth modeling of right-censored survival data with {icpack}", "author": "Hein Putter & Paul Eilers", "engine": "knitr::knitr", "headings": [ "Introduction", "Ovarian cancer data", "Preliminaries", "Using icfit", "Plotting", "Predicting" ], "created": "2024-07-03 02:42:30", "modified": "2024-07-03 02:42:30", "commits": 1 } ], "_score": 2.4771212547196626, "_indexed": true, "_nocasepkg": "icpack", "_universes": [ "hputter" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.0", "date": "2026-05-15T09:21:09.000Z", "distro": "noble", "commit": "e8e6f8258c502ca5412df7d77f484ef196ede8d3", "fileid": "cc6fa4ef844c6d88c084bfc55291558b22ff6a599bad81a21678f5fc429ab5ca", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hputter/actions/runs/25910046532" }, { "r": "4.6.0", "os": "linux", "version": "0.1.0", "date": "2026-05-15T09:21:02.000Z", "distro": "noble", "commit": "e8e6f8258c502ca5412df7d77f484ef196ede8d3", "fileid": "c9c1b20966d16f2cb6ce5270365e2442dccad089c4efea63c21dd66f530d305f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hputter/actions/runs/25910046532" }, { "r": "4.5.3", "os": "mac", "version": "0.1.0", "date": "2026-05-15T09:21:08.000Z", "commit": "e8e6f8258c502ca5412df7d77f484ef196ede8d3", "fileid": "402924615f9b039f8486a79ac869d92d911e92c701f07ceb43bc7dc97e7ca3be", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hputter/actions/runs/25910046532" }, { "r": "4.6.0", "os": "mac", "version": "0.1.0", "date": "2026-05-15T09:21:15.000Z", "commit": "e8e6f8258c502ca5412df7d77f484ef196ede8d3", "fileid": "661056290040863f26817b1caf8028875c2e7402f3a63fe1d093bdaf3607a732", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hputter/actions/runs/25910046532" }, { "r": "4.7.0", "os": "win", "version": "0.1.0", "date": "2026-05-15T09:20:06.000Z", "commit": "e8e6f8258c502ca5412df7d77f484ef196ede8d3", "fileid": "4d5eb0fbd54c76e91bb848b0a1153c596f431e0e270011cd2a051a8ddf13783a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hputter/actions/runs/25910046532" }, { "r": "4.5.3", "os": "win", "version": "0.1.0", "date": "2026-05-15T09:20:38.000Z", "commit": "e8e6f8258c502ca5412df7d77f484ef196ede8d3", "fileid": "0b412e4517c97a0eb8ea71a91cc52adf86c2de378e713045090e453f6331830c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hputter/actions/runs/25910046532" }, { "r": "4.6.0", "os": "win", "version": "0.1.0", "date": "2026-05-15T09:20:09.000Z", "commit": "e8e6f8258c502ca5412df7d77f484ef196ede8d3", "fileid": "c22cfe860e37356ff5054ffd998f9f1b1680c59dd08bd69fd840acaf816b2561", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/hputter/actions/runs/25910046532" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.0", "date": "2026-06-02T19:28:42.000Z", "commit": "e8e6f8258c502ca5412df7d77f484ef196ede8d3", "fileid": "a330609c71f06e6dd3b909e365a9ab7e2a116da966700bdcfdec8351bbeecbcd", "status": "success", "buildurl": "https://github.com/r-universe/hputter/actions/runs/25910046532" } ] }